Problem: How to reflect money on the account "Cash in Transit" ?

Solution: You will need to create a couple of documents 

1.  To record the receipt of money to the account Cash in Transit, please create Cash Receipt document , go to Money module - Cash Receipt.  Press drop-down list In Cash Account filed , in the opened box create Cash Account - Cash in Transit and pick it .

The received money will be reflected in the General Ledger on Debit  side of the account Cash in Transit.

2. To register the funds received to your bank accounts , create Money Transfer document.